The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms

Walker, Kimberly; Kalra, Divya; Lowdon, Rebecca; Chen, Guangyi; Sedlazeck, Fritz J; Busby, Ben; Molik, David; Soto, Daniela C.; Dabbaghie, Fawaz; Khleifat, Ahmad Al; Mahmoud, Medhat; Paulin, Luis F.

dc.contributor.author	Walker, Kimberly
dc.contributor.author	Kalra, Divya
dc.contributor.author	Lowdon, Rebecca
dc.contributor.author	Chen, Guangyi
dc.contributor.author	Sedlazeck, Fritz J
dc.contributor.author	Busby, Ben
dc.contributor.author	Molik, David
dc.contributor.author	Soto, Daniela C.
dc.contributor.author	Dabbaghie, Fawaz
dc.contributor.author	Khleifat, Ahmad Al
dc.contributor.author	Mahmoud, Medhat
dc.contributor.author	Paulin, Luis F.
dc.date.accessioned	2023-04-25T09:48:28Z
dc.date.available	2023-04-25T09:48:28Z
dc.date.issued	2022
dc.identifier.issn	20461402
dc.identifier.uri	http://localhost:8080/xmlui/handle/123456789/2257
dc.description	This paper is submitted by the author of IIT (BHU), Varanasi	en_US
dc.description.abstract	In October 2021, 59 scientists from 14 countries and 13 U.S. states collaborated virtually in the Third Annual Baylor College of Medicine & DNANexus Structural Variation hackathon. The goal of the hackathon was to advance research on structural variants (SVs) by prototyping and iterating on open-source software. This led to nine hackathon projects focused on diverse genomics research interests, including various SV discovery and genotyping methods, SV sequence reconstruction, and clinically relevant structural variation, including SARS-CoV-2 variants. Repositories for the projects that participated in the hackathon are available at https://github.com/collaborativebioinformatics.	en_US
dc.description.sponsorship	The hackathon was sponsored by Pacific Biosciences of California, Inc. and Oxford Nanopore Technologies Limited. We'd like to thank Richard Gibbs and the Baylor College of Medicine Human Genome Sequencing Center for hosting the hackathon. Computation was performed on the DNAnexus platform, which donated compute and storage to the hackathon.	en_US
dc.language.iso	en	en_US
dc.publisher	F1000 Research Ltd	en_US
dc.relation.ispartofseries	F1000Research;Article number 530
dc.subject	COVID-19	en_US
dc.subject	Genomics	en_US
dc.subject	Humans	en_US
dc.subject	SARS-CoV-2	en_US
dc.subject	Software	en_US
dc.subject	Article; bioinformatics; data processing; gene frequency; genetic variability; genetics; genomics; genotype; hackathon; high throughput sequencing; human; introgression; k mer; nonhuman; organisms; phenotype; Severe acute respiratory syndrome coronavirus 2; short tandem repeat; structural variant; tomato; virus DNA cell DNA interaction; genomics; software	en_US
dc.title	The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms	en_US
dc.type	Article	en_US